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A catalog of small proteins from the global microbiome

Y Duan CD Santos-Júnior TS Schmidt A Fullam BLS de Almeida C Zhu M Kuhn XM Zhao P Bork LP Coelho

Nature Communications2024
Long-read sequencing reveals extensive gut phagenome structural variations driven by genetic exchange with bacterial hosts

S Lai H Wang P Bork WH Chen Zhao XM

Science Advances2024
Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐and Long‐Read Sequencing

J Chen C Sun Y Dong M Jin S Lai L Jia X Zhao H Wang NL Gao P Bork P Z Liu WH Chen XM Zhao

Advanced Science2024
Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial

J Zhu C Sun M Li G Hu XM Zhao Chen WH

Gut2024
Discovery of antimicrobial peptides in the global microbiome with machine learning

CD Santos-Júnior MDT Torres Y Duan Del Río ÁRodríguez TSB Schmidt H Chong A Fullam M Kuhn C Zhu A Houseman J Somborski A Vines XM Zhao P Bork J Huerta-Cepas C de la Fuente-Nunez LP Coelho

Cell2024
STAB2: an updated spatio-temporal cell atlas of the human and mouse brain

YT Yang Z Gan J Zhang X Zhao Y Yang S Han W Wu XM Zhao

Nucleic Acids Research2024
An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset

A Yang YT Yang XM Zhao

PLOS Genetics2023
Engineering of cytosine base editors with DNA damage minimization and editing scope diversification

B Yuan S Zhang L Song J Chen J Cao J Qiu Z Qiu J Chen Zhao XM Cheng TL

Nucleic Acids Research2023
SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing

S Pan XM Zhao LP Coelho

Bioinformatics2023
Enterotypes of the human gut mycobiome

S Lai Y Yan Y Pu S Lun JG Qiu BH Jiang MI Keller M Wang P Bork WH Chen Y Zheng XM Zhao

Microbiome2023

Links： Aihara Group Kim Group Bork Group Chen Lab Gerstein Lab

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A catalog of small proteins from the global microbiome

Nature Communications2024

Long-read sequencing reveals extensive gut phagenome structural variations driven by genetic exchange with bacterial hosts

Science Advances2024

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐and Long‐Read Sequencing

Advanced Science2024

Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial

Gut2024

Discovery of antimicrobial peptides in the global microbiome with machine learning

Cell2024

STAB2: an updated spatio-temporal cell atlas of the human and mouse brain

Nucleic Acids Research2024

An augmented Mendelian randomization approach provides causality of brain imaging features on complex traits in a single biobank-scale dataset

PLOS Genetics2023

Engineering of cytosine base editors with DNA damage minimization and editing scope diversification

Nucleic Acids Research2023

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing

Bioinformatics2023

Enterotypes of the human gut mycobiome

Microbiome2023

Publication