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Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners

H Wang C Sun C Y Li J Chen XM Zhao WH Chen

Microbiome2024
Integrating rare pathogenic variant prioritization with gene-based association analysis to identify novel genes and relevant multimodal traits for Alzheimer's disease

J Cao C Zhang CZ Lo Q Guo J Ding X Luo ZC Zhang F Chen ZIB Consortium TL Cheng J Chen XM Zhao

Alzheimers & Dementia2024
Association of birth weight with neuropsychological functioning in early adolescence: A retrospective cohort study

Q Zhou X Zhao J Chen A Yang XM Zhao X Li

Psychiatry Research2024
MicroHDF: predicting host phenotypes with metagenomic data using a deep forest-based framework

K Shi Q Liu Q Ji Q He XM Zhao

Briefings in Bioinformatics2024
Association between twin status with cognitive, behavioral development and brain structure in early adolescence: a retrospective cohort analysis based on the Adolescent Brain Cognitive Development Study

Q Zhou X Zhao J Chen J Xu A Yang Y Xiong X Yin XM Zhao X Li

European Child & Adolescent Psychiatry2024
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes

Y Dong WH Chen XM Zhao

Genome Biology2024
A catalog of small proteins from the global microbiome

Y Duan CD Santos-Júnior TS Schmidt A Fullam BLS de Almeida C Zhu M Kuhn XM Zhao P Bork LP Coelho

Nature Communications2024
Long-read sequencing reveals extensive gut phagenome structural variations driven by genetic exchange with bacterial hosts

S Lai H Wang P Bork WH Chen Zhao XM

Science Advances2024
Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐and Long‐Read Sequencing

J Chen C Sun Y Dong M Jin S Lai L Jia X Zhao H Wang NL Gao P Bork P Z Liu WH Chen XM Zhao

Advanced Science2024
Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial

J Zhu C Sun M Li G Hu XM Zhao Chen WH

Gut2024

Links： Aihara Group Kim Group Bork Group Chen Lab Gerstein Lab

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Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners

Microbiome2024

Integrating rare pathogenic variant prioritization with gene-based association analysis to identify novel genes and relevant multimodal traits for Alzheimer's disease

Alzheimers & Dementia2024

Association of birth weight with neuropsychological functioning in early adolescence: A retrospective cohort study

Psychiatry Research2024

MicroHDF: predicting host phenotypes with metagenomic data using a deep forest-based framework

Briefings in Bioinformatics2024

Association between twin status with cognitive, behavioral development and brain structure in early adolescence: a retrospective cohort analysis based on the Adolescent Brain Cognitive Development Study

European Child & Adolescent Psychiatry2024

VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes

Genome Biology2024

A catalog of small proteins from the global microbiome

Nature Communications2024

Long-read sequencing reveals extensive gut phagenome structural variations driven by genetic exchange with bacterial hosts

Science Advances2024

Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐and Long‐Read Sequencing

Advanced Science2024

Compared to histamine-2 receptor antagonist, proton pump inhibitor induces stronger oral-to-gut microbial transmission and gut microbiome alterations: a randomised controlled trial

Gut2024

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